DisGeNET - a database of gene-disease associations

List of associated variants

Liver carcinoma, C2239176

Source: ALL

Results per page

Gene

Disease

Variant

Source

DSI _v

DPI _v

pLI

Consequence

AF_EXOME

AF_GENOME

Variant	Gene	DSI _v	DPI _v	Chr	Position	Consequence	Alleles	Class	AF EXOME	AF GENOME	Num. diseases
rs25490	XRCC1	0.851	0.120	19	43552189	missense variant	T/C	snv	7.2E-03	2.6E-02	4
rs139599857	XRCC1	0.882	0.120	19	43545922	missense variant	C/G	snv	1.6E-05	2.1E-05	3
rs2293035	XRCC1	0.882	0.080	19	43546923	synonymous variant	G/A	snv	1.6E-04	1.5E-04	3
rs1870134	XPC ; LSM3	0.827	0.120	3	14178523	missense variant	G/C;T	snv	4.2E-02; 8.1E-06		5
rs2228001	XPC	0.570	0.480	3	14145949	missense variant	G/T	snv	0.63	0.65	60
rs9926344	WWOX	1.000	0.080	16	78986883	intron variant	G/A;C;T	snv			2
rs4730775	WNT2	0.851	0.200	7	117277064	3 prime UTR variant	C/T	snv		0.41	4
rs2305619	VEPH1 ; PTX3	0.882	0.240	3	157437072	intron variant	A/G	snv	0.55	0.50	3
rs7664413	VEGFC ; LOC105377555	0.851	0.160	4	176687553	intron variant	C/T	snv	0.24	0.25	7
rs1485766	VEGFC ; LOC105377555	0.882	0.120	4	176689730	intron variant	T/A;G	snv			3
rs699947	VEGFA	0.570	0.680	6	43768652	upstream gene variant	A/C;T	snv			67
rs3025039	VEGFA	0.576	0.720	6	43784799	3 prime UTR variant	C/T	snv		0.13	62
rs833061	VEGFA	0.605	0.600	6	43769749	upstream gene variant	C/G;T	snv			42
rs1570360	VEGFA	0.641	0.680	6	43770093	upstream gene variant	A/G	snv		0.76	38
rs3025035	VEGFA	0.851	0.240	6	43783622	non coding transcript exon variant	C/T	snv		0.14	4
rs2228570	VDR	0.521	0.760	12	47879112	start lost	A/C;G;T	snv	0.63		99
rs7975232	VDR	0.576	0.760	12	47845054	intron variant	C/A	snv	0.51	0.55	56
rs4516035	VDR	0.776	0.360	12	47906043	non coding transcript exon variant	T/C	snv		0.31	10
rs2239186	VDR	0.882	0.120	12	47875627	intron variant	A/C;G	snv		0.17	5
rs80291436	VCX	1.000	0.080	X	7843706	missense variant	T/A;C;G	snv	4.9E-05; 0.19		3
rs2516839	USF1	0.732	0.320	1	161043331	5 prime UTR variant	C/T	snv		0.49	14
rs2073658	USF1	0.882	0.200	1	161040972	intron variant	C/T	snv		0.21	4
rs2073655	USF1	1.000	0.080	1	161042800	intron variant	G/A	snv	0.25	0.22	1
rs3890995	UNG	1.000	0.080	12	109095724	upstream gene variant	T/C	snv		0.19	1
rs2132039	UGT2B28	0.925	0.120	4	69293669	intron variant	T/A;C	snv			2